DEIReconstructor: a software for diffraction enhanced imaging processing and tomography reconstruction

ZHANG Kai; YUAN Qing-Xi; HUANG Wan-Xia; ZHU Pei-Ping; WU Zi-Yu

doi:10.1088/1674-1137/38/10/106202

Chinese Physics C> 2014, Vol. 38> Issue(10) : 106202 DOI: 10.1088/1674-1137/38/10/106202

DEIReconstructor: a software for diffraction enhanced imaging processing and tomography reconstruction

Abstract
HTML
Reference
Related

PDF

Abstract：
Diffraction enhanced imaging (DEI) has been widely applied in many fields, especially when imaging low-Z samples or when the difference in the attenuation coefficient between different regions in the sample is too small to be detected. Recent developments of this technique have presented a need for a new software package for data analysis. Here, the Diffraction Enhanced Image Reconstructor (DEIReconstructor), developed in Matlab, is presented. DEIReconstructor has a user-friendly graphical user interface and runs under any of the 32-bit or 64-bit Microsoft Windows operating systems including XP and Win7. Many of its features are integrated to support imaging preprocessing, extract absorption, refractive and scattering information of diffraction enhanced imaging and allow for parallel-beam tomography reconstruction for DEI-CT. Furthermore, many other useful functions are also implemented in order to simplify the data analysis and the presentation of results. The compiled software package is freely available.

References

[1]

Dilmanian F et al. Phys. Med. Biol., 2000, 45: 933[2] Wilkins S et al. Nature, 1996, 384: 335[3] Chapman D et al. Synchrotron Radiation News, 1998, 11: 4[4] Momose A, Kawamoto S. Jpn. J. Appl. Phys., 2006, 45: 314[5] Pavlov K et al. J. Phys. D: Appl. Phys., 2001, 34: 168[6] ZHU P et al. J. Phys. D: Appl. Phys., 2006, 39: 4142[7] ZHU P et al. PNAS, 2010, 107: 13576[8] ZHANG K et al. Phys. Med. Biol., 2008, 53: 5757[9] CHEN R C et al. J. Synchrotron. Radiat, 2012, 19: 836[10] Chapman D et al. Phys. Med. Biol., 1997, 42: 2015[11] ZHANG K et al. Anal. Bioanal. Chem., 2010, 397: 2067[12] ZHU P P et al. Appl. Phys. Lett., 2005, 87: 264101[13] Maksimenko A et al. Appl. Phys. Lett., 2005. 86: 1241051[14] ZHANG X et al. Phys. Med. Biol., 2008, 53: 5735[15] WANG M et al. J. Phys. D: Appl. Phys., 2007, 40: 6917[16] WANG J et al. Phys. Med. Biol., 2006, 51: 3391[17] HUANG Z et al. Appl. Phys. Lett., 2006, 89: 041124[18] SUN Y et al. Computerized Tomography Based on X-ray Refraction Information. In Biomedical Imaging: Nano to Macro, 2006. 3rd IEEE International Symposium on. 2006. 1022[19] Oltulu O et al. J. Phys. D: Appl. Phys., 2003, 17: 2152

[1]	Chi Wang , Dong Liu , Yifeng Wei , Zhiyong Zhang , Yunlong Zhang , Xiaolian Wang , Zizong Xu , Guangshun Huang , Andrii Tykhonov , Xin Wu , Jingjing Zang , Yang Liu , Wei Jiang , Sicheng Wen , Jian Wu , Jin Chang . Offline software for the DAMPE experiment. Chinese Physics C, 2017, 41(10): 106201. doi: 10.1088/1674-1137/41/10/106201
[2]	LIU Long , HUANG Yang , XU Qing , YAN Ling-Tong , LI Li , FENG Song-Lin , FENG Xiang-Qian . Attenuation correction of L-shell X-ray fluorescence computed tomography imaging. Chinese Physics C, 2015, 39(3): 038203. doi: 10.1088/1674-1137/39/3/038203
[3]	FAN Xing-Ming , WANG Yi , WANG Xue-Wu , ZENG Zhi , ZENG Ming , ZHAO Zi-Ran , CHENG Jian-Ping . A position resolution MRPC for muon tomography. Chinese Physics C, 2014, 38(4): 046003. doi: 10.1088/1674-1137/38/4/046003
[4]	LIU Ying-Biao , HE Miao , LIU Bei-Jiang , WANG Meng , MA Qiu-Mei , QI Fa-Zhi , ZENG Shan . Onsite data processing and monitoring for the Daya Bay experiment. Chinese Physics C, 2014, 38(8): 086001. doi: 10.1088/1674-1137/38/8/086001
[5]	ZHOU Xiao-Lin , YUN Ming-Kai , CAO Xue-Xiang , LIU Shuang-Quan , WANG Lu , HUANG Xian-Chao , WEI Long . Evaluation of imaging protocol for ECT based on CS image reconstruction algorithm. Chinese Physics C, 2014, 38(4): 048201. doi: 10.1088/1674-1137/38/4/048201
[6]	YAN Bin , DENG Lin , HAN Yu , ZHANG Feng , WANG Xian-Chao , LI Lei . Fast local reconstruction by selective backprojection for low dose in dental computed tomography. Chinese Physics C, 2014, 38(10): 108201. doi: 10.1088/1674-1137/38/10/108201
[7]	LI Zhi-Hong . A program for SAXS data processing and analysis. Chinese Physics C, 2013, 37(10): 108002. doi: 10.1088/1674-1137/37/10/108002
[8]	WANG Bin , CHEN Ya-Zheng , LI Xue-Qian . Earthquake forecast via neutrino tomography. Chinese Physics C, 2011, 35(4): 325-332. doi: 10.1088/1674-1137/35/4/002
[9]	YAO Jian , JI Xiao-Bin , LI De-Min . Histogram comparison used in BESⅢ software and data validation. Chinese Physics C, 2010, 34(3): 374-378. doi: 10.1088/1674-1137/34/3/013
[10]	YUN Ming-Kai , LIU Shuang-Quan , SHAN Bao-Ci , WEI Long . An advanced fully 3D OSEM reconstruction for positron emission tomography. Chinese Physics C, 2010, 34(2): 231-236. doi: 10.1088/1674-1137/34/2/015
[11]	TAN Gao , WANG Hua-Qiao , CHEN Yu , YUAN Qing-Xi , LI Gang , ZHANG Xiao-Dan , ZHU Pei-Ping , ZHONG Xiu-Feng , TANG Jin-Tian . X-ray diffraction enhanced imaging study of intraocular tumors in human beings. Chinese Physics C, 2010, 34(2): 237-244. doi: 10.1088/1674-1137/34/2/016
[12]	CHEN Zhi-Qiang , DING Fei , HUANG Zhi-Feng , ZHANG Li , YIN Hong-Xia , WANG Zhen-Chang , ZHU Pei-Ping . Polynomial curve fitting method for refraction-angle extraction in diffraction enhanced imaging. Chinese Physics C, 2009, 33(11): 969-974. doi: 10.1088/1674-1137/33/11/008
[13]	ZHANG Xi , YUAN Qing-Xi , YANG Xin-Rong , LI Hai-Qing , CHEN Yu , CHEN Shao-Liang , ZHU Pei-Ping , HUANG Wan-Xia . Medical application of diffraction enhanced imaging in mouse liver blood vessels. Chinese Physics C, 2009, 33(11): 986-990. doi: 10.1088/1674-1137/33/11/011
[14]	WANG Zhen-Tian , ZHANG Li , HUANG Zhi-Feng , KANG Ke-Jun , CHEN Zhi-Qiang , FANG Qiao-Guang , ZHU Pei-Ping . An ART iterative reconstruction algorithm for computed tomography of diffraction enhanced imaging. Chinese Physics C, 2009, 33(11): 975-980. doi: 10.1088/1674-1137/33/11/009
[15]	CHEN Yu , JIA Quan-Jie , LI Gang , WANG Yu-Zhu , XUE Xian-Ying , JIANG Xiao-Ming , CHEN Zhi-Hua , PAN Lin , LI Hong-Yan . Refraction Angle and Edge Visibility in X-Ray Diffraction Enhanced Imaging. Chinese Physics C, 2007, 31(10): 982-989.
[16]	CHEN Bo , SHU Hang , ZHU Pei-Ping , CHEN Chun-Chong , WANG Jun-Yue , YUAN Qing-Xi , JIANG Fan , CHEN Jie , WU Zi-Yu , MING Hai . Information Extracting and Processing with Diffraction nhanced Imaging of X-Ray. Chinese Physics C, 2006, 30(6): 587-590.
[17]	HUANG Zhi-Feng , LI Zheng , KANG Ke-Jun , ZHU Pei-Ping , YUAN Qing-Xi , HUANG Wan-Xia , WANG Jun-Yue , LI Gang , ZHANG Di , YU Ai-Min . Study on Extraction Method of Phase Information in X-Ray Diffraction Enhanced Imaging. Chinese Physics C, 2005, 29(S1): 133-136.
[18]	LIU Cheng-Lin , ZHANG Yuan , ZHANG Xin-Yi , YANG Wen-Tao , PENG Wei-Jun , SHI Da-Ren , ZHU Pei-Ping , HUANG Wan-Xia , YUAN Qing-Xi . Diffraction Enhanced Imaging of Breast Tissue. Chinese Physics C, 2005, 29(S1): 130-132.
[19]	YUAN Qing-Xi , WANG Jun-Yue , ZHU Pei-Ping , HUANG Wan-Xia , SHU Hang , HU Tian-Dou , WU Ziyu . Computed Tomography Using Peak-Position Image of Diffraction Enhanced Imaging. Chinese Physics C, 2005, 29(10): 1023-1026.
[20]	JIANG Xiao-Ming , LI Gang , CHEN Zhi-Hua , TANG Jin-Tian . Refractive Contrast in X-Ray Diffraction Enhanced Imaging. Chinese Physics C, 2004, 28(12): 1282-1290.

Access

Get Citation

ZHANG Kai, YUAN Qing-Xi, HUANG Wan-Xia, ZHU Pei-Ping and WU Zi-Yu. DEIReconstructor: a software for diffraction enhanced imaging processing and tomography reconstruction[J]. Chinese Physics C, 2014, 38(10): 106202. doi: 10.1088/1674-1137/38/10/106202

RIS(for EndNote,Reference Manager,ProCite)

BibTex

Txt

Milestone

Received: 2013-11-15
Revised: 2014-03-26

Article Metric

Article Views(2069)
PDF Downloads(171)
Cited by(0)

Policy on re-use

To reuse of subscription content published by CPC, the users need to request permission from CPC, unless the content was published under an Open Access license which automatically permits that type of reuse.

通讯作者: 陈斌, [email protected]

1.
沈阳化工大学材料科学与工程学院沈阳 110142

DEIReconstructor: a software for diffraction enhanced imaging processing and tomography reconstruction

Corresponding author: ZHU Pei-Ping,

Corresponding author: WU Zi-Yu,

Received Date: 2013-11-15

Accepted Date: 2014-03-26

Available Online: 2014-10-05

Abstract: Diffraction enhanced imaging (DEI) has been widely applied in many fields, especially when imaging low-Z samples or when the difference in the attenuation coefficient between different regions in the sample is too small to be detected. Recent developments of this technique have presented a need for a new software package for data analysis. Here, the Diffraction Enhanced Image Reconstructor (DEIReconstructor), developed in Matlab, is presented. DEIReconstructor has a user-friendly graphical user interface and runs under any of the 32-bit or 64-bit Microsoft Windows operating systems including XP and Win7. Many of its features are integrated to support imaging preprocessing, extract absorption, refractive and scattering information of diffraction enhanced imaging and allow for parallel-beam tomography reconstruction for DEI-CT. Furthermore, many other useful functions are also implemented in order to simplify the data analysis and the presentation of results. The compiled software package is freely available.

HTML

Reference (1)

DEIReconstructor: a software for diffraction enhanced imaging processing and tomography reconstruction

Abstract：

References

Access

Article Metrics

Metrics

通讯作者: 陈斌, [email protected]

Email This Article